SRX6651677
GSM4006762: Combi-GCR; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR3C1

Cell type

Cell type Class
Blood
Cell type
697
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
B-ALL cell line
cell line
697
protocol
ChIPmentation
agent
DEXA+KPT
antibody
GCR

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
all libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25482138
Reads aligned (%)
97.4
Duplicates removed (%)
20.5
Number of peaks
1049 (qval < 1E-05)

hg19

Number of total reads
25482138
Reads aligned (%)
96.4
Duplicates removed (%)
21.8
Number of peaks
1078 (qval < 1E-05)

Base call quality data from DBCLS SRA